Merge pull request #72 from n-peugnet/implement-cytoscape.js

Implement cytoscape.js

1 files changed, 98 insertions, 72 deletions

diff --git a/package-lock.json b/package-lock.json
index 6827641..5302d80 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -434,9 +434,9 @@
       "dev": true
     },
     "acorn": {
-      "version": "6.3.0",
-      "resolved": "https://registry.npmjs.org/acorn/-/acorn-6.3.0.tgz",
-      "integrity": "sha512-/czfa8BwS88b9gWQVhc8eknunSA2DoJpJyTQkhheIf5E48u1N0R4q/YxxsAeqRrmK9TQ/uYfgLDfZo91UlANIA==",
+      "version": "6.4.1",
+      "resolved": "https://registry.npmjs.org/acorn/-/acorn-6.4.1.tgz",
+      "integrity": "sha512-ZVA9k326Nwrj3Cj9jlh3wGFutC2ZornPNARZwsNYqQYgN0EsV2d53w5RN/co65Ohn4sUAUtb1rSUAOD6XN9idA==",
       "dev": true
     },
     "agent-base": {
@@ -1336,6 +1336,14 @@
       "integrity": "sha1-tf1UIgqivFq1eqtxQMlAdUUDwac=",
       "dev": true
     },
+    "cose-base": {
+      "version": "1.0.1",
+      "resolved": "https://registry.npmjs.org/cose-base/-/cose-base-1.0.1.tgz",
+      "integrity": "sha512-LErvsHUOzYseXGFKWGCAQBTePO1iYZ9JL+YZlmoyqZ7EDcBzrEMRSouOGszQl72J6VK0AVrJbnNCf3eciqy7SA==",
+      "requires": {
+        "layout-base": "^1.0.0"
+      }
+    },
     "cosmiconfig": {
       "version": "5.2.1",
       "resolved": "https://registry.npmjs.org/cosmiconfig/-/cosmiconfig-5.2.1.tgz",
@@ -1467,6 +1475,23 @@
       "integrity": "sha1-WW6WmP0MgOEgOMK4LW6xs1tiJNk=",
       "dev": true
     },
+    "cytoscape": {
+      "version": "3.14.1",
+      "resolved": "https://registry.npmjs.org/cytoscape/-/cytoscape-3.14.1.tgz",
+      "integrity": "sha512-s8TaaDzXZ5dMkaoZXrfNRdR053L6MsF+P/Yb4AXpF8Y3VNHZXbuydMpaJTlDG/0HKqs51qHSejTUxV1fyQfU6g==",
+      "requires": {
+        "heap": "^0.2.6",
+        "lodash.debounce": "^4.0.8"
+      }
+    },
+    "cytoscape-cose-bilkent": {
+      "version": "4.1.0",
+      "resolved": "https://registry.npmjs.org/cytoscape-cose-bilkent/-/cytoscape-cose-bilkent-4.1.0.tgz",
+      "integrity": "sha512-wgQlVIUJF13Quxiv5e1gstZ08rnZj2XaLHGoFMYXz7SkNfCDOOteKBE6SYRfA9WxxI/iBc3ajfDoc6hb/MRAHQ==",
+      "requires": {
+        "cose-base": "^1.0.0"
+      }
+    },
     "date-now": {
       "version": "0.1.4",
       "resolved": "https://registry.npmjs.org/date-now/-/date-now-0.1.4.tgz",
@@ -2223,14 +2248,13 @@
       "dev": true
     },
     "fsevents": {
-      "version": "1.2.9",
-      "resolved": "https://registry.npmjs.org/fsevents/-/fsevents-1.2.9.tgz",
-      "integrity": "sha512-oeyj2H3EjjonWcFjD5NvZNE9Rqe4UW+nQBU2HNeKw0koVLEFIhtyETyAakeAM3de7Z/SW5kcA+fZUait9EApnw==",
+      "version": "1.2.12",
+      "resolved": "https://registry.npmjs.org/fsevents/-/fsevents-1.2.12.tgz",
+      "integrity": "sha512-Ggd/Ktt7E7I8pxZRbGIs7vwqAPscSESMrCSkx2FtWeqmheJgCo2R74fTsZFCifr0VTPwqRpPv17+6b8Zp7th0Q==",
       "dev": true,
       "optional": true,
       "requires": {
-        "nan": "^2.12.1",
-        "node-pre-gyp": "^0.12.0"
+        "node-pre-gyp": "*"
       },
       "dependencies": {
         "abbrev": {
@@ -2278,7 +2302,7 @@
           }
         },
         "chownr": {
-          "version": "1.1.1",
+          "version": "1.1.4",
           "bundled": true,
           "dev": true,
           "optional": true
@@ -2308,7 +2332,7 @@
           "optional": true
         },
         "debug": {
-          "version": "4.1.1",
+          "version": "3.2.6",
           "bundled": true,
           "dev": true,
           "optional": true,
@@ -2335,12 +2359,12 @@
           "optional": true
         },
         "fs-minipass": {
-          "version": "1.2.5",
+          "version": "1.2.7",
           "bundled": true,
           "dev": true,
           "optional": true,
           "requires": {
-            "minipass": "^2.2.1"
+            "minipass": "^2.6.0"
           }
         },
         "fs.realpath": {
@@ -2366,7 +2390,7 @@
           }
         },
         "glob": {
-          "version": "7.1.3",
+          "version": "7.1.6",
           "bundled": true,
           "dev": true,
           "optional": true,
@@ -2395,7 +2419,7 @@
           }
         },
         "ignore-walk": {
-          "version": "3.0.1",
+          "version": "3.0.3",
           "bundled": true,
           "dev": true,
           "optional": true,
@@ -2414,7 +2438,7 @@
           }
         },
         "inherits": {
-          "version": "2.0.3",
+          "version": "2.0.4",
           "bundled": true,
           "dev": true,
           "optional": true
@@ -2450,13 +2474,13 @@
           }
         },
         "minimist": {
-          "version": "0.0.8",
+          "version": "1.2.5",
           "bundled": true,
           "dev": true,
           "optional": true
         },
         "minipass": {
-          "version": "2.3.5",
+          "version": "2.9.0",
           "bundled": true,
           "dev": true,
           "optional": true,
@@ -2466,42 +2490,42 @@
           }
         },
         "minizlib": {
-          "version": "1.2.1",
+          "version": "1.3.3",
           "bundled": true,
           "dev": true,
           "optional": true,
           "requires": {
-            "minipass": "^2.2.1"
+            "minipass": "^2.9.0"
           }
         },
         "mkdirp": {
-          "version": "0.5.1",
+          "version": "0.5.3",
           "bundled": true,
           "dev": true,
           "optional": true,
           "requires": {
-            "minimist": "0.0.8"
+            "minimist": "^1.2.5"
           }
         },
         "ms": {
-          "version": "2.1.1",
+          "version": "2.1.2",
           "bundled": true,
           "dev": true,
           "optional": true
         },
         "needle": {
-          "version": "2.3.0",
+          "version": "2.3.3",
           "bundled": true,
           "dev": true,
           "optional": true,
           "requires": {
-            "debug": "^4.1.0",
+            "debug": "^3.2.6",
             "iconv-lite": "^0.4.4",
             "sax": "^1.2.4"
           }
         },
         "node-pre-gyp": {
-          "version": "0.12.0",
+          "version": "0.14.0",
           "bundled": true,
           "dev": true,
           "optional": true,
@@ -2515,11 +2539,11 @@
             "rc": "^1.2.7",
             "rimraf": "^2.6.1",
             "semver": "^5.3.0",
-            "tar": "^4"
+            "tar": "^4.4.2"
           }
         },
         "nopt": {
-          "version": "4.0.1",
+          "version": "4.0.3",
           "bundled": true,
           "dev": true,
           "optional": true,
@@ -2529,19 +2553,29 @@
           }
         },
         "npm-bundled": {
-          "version": "1.0.6",
+          "version": "1.1.1",
+          "bundled": true,
+          "dev": true,
+          "optional": true,
+          "requires": {
+            "npm-normalize-package-bin": "^1.0.1"
+          }
+        },
+        "npm-normalize-package-bin": {
+          "version": "1.0.1",
           "bundled": true,
           "dev": true,
           "optional": true
         },
         "npm-packlist": {
-          "version": "1.4.1",
+          "version": "1.4.8",
           "bundled": true,
           "dev": true,
           "optional": true,
           "requires": {
             "ignore-walk": "^3.0.1",
-            "npm-bundled": "^1.0.1"
+            "npm-bundled": "^1.0.1",
+            "npm-normalize-package-bin": "^1.0.1"
           }
         },
         "npmlog": {
@@ -2606,7 +2640,7 @@
           "optional": true
         },
         "process-nextick-args": {
-          "version": "2.0.0",
+          "version": "2.0.1",
           "bundled": true,
           "dev": true,
           "optional": true
@@ -2621,18 +2655,10 @@
             "ini": "~1.3.0",
             "minimist": "^1.2.0",
             "strip-json-comments": "~2.0.1"
-          },
-          "dependencies": {
-            "minimist": {
-              "version": "1.2.0",
-              "bundled": true,
-              "dev": true,
-              "optional": true
-            }
           }
         },
         "readable-stream": {
-          "version": "2.3.6",
+          "version": "2.3.7",
           "bundled": true,
           "dev": true,
           "optional": true,
@@ -2647,7 +2673,7 @@
           }
         },
         "rimraf": {
-          "version": "2.6.3",
+          "version": "2.7.1",
           "bundled": true,
           "dev": true,
           "optional": true,
@@ -2674,7 +2700,7 @@
           "optional": true
         },
         "semver": {
-          "version": "5.7.0",
+          "version": "5.7.1",
           "bundled": true,
           "dev": true,
           "optional": true
@@ -2727,18 +2753,18 @@
           "optional": true
         },
         "tar": {
-          "version": "4.4.8",
+          "version": "4.4.13",
           "bundled": true,
           "dev": true,
           "optional": true,
           "requires": {
             "chownr": "^1.1.1",
             "fs-minipass": "^1.2.5",
-            "minipass": "^2.3.4",
-            "minizlib": "^1.1.1",
+            "minipass": "^2.8.6",
+            "minizlib": "^1.2.1",
             "mkdirp": "^0.5.0",
             "safe-buffer": "^5.1.2",
-            "yallist": "^3.0.2"
+            "yallist": "^3.0.3"
           }
         },
         "util-deprecate": {
@@ -2763,7 +2789,7 @@
           "optional": true
         },
         "yallist": {
-          "version": "3.0.3",
+          "version": "3.1.1",
           "bundled": true,
           "dev": true,
           "optional": true
@@ -2994,6 +3020,11 @@
         "minimalistic-assert": "^1.0.1"
       }
     },
+    "heap": {
+      "version": "0.2.6",
+      "resolved": "https://registry.npmjs.org/heap/-/heap-0.2.6.tgz",
+      "integrity": "sha1-CH4fELBGky/IWU3Z5tN4r8nR5aw="
+    },
     "hmac-drbg": {
       "version": "1.0.1",
       "resolved": "https://registry.npmjs.org/hmac-drbg/-/hmac-drbg-1.0.1.tgz",
@@ -3537,9 +3568,9 @@
       }
     },
     "kind-of": {
-      "version": "6.0.2",
-      "resolved": "https://registry.npmjs.org/kind-of/-/kind-of-6.0.2.tgz",
-      "integrity": "sha512-s5kLOcnH0XqDO+FvuaLX8DDjZ18CGFk7VygH40QoKPUQhW4e2rvM0rwUq0t8IQDOwYSeLK01U90OjzBTme2QqA==",
+      "version": "6.0.3",
+      "resolved": "https://registry.npmjs.org/kind-of/-/kind-of-6.0.3.tgz",
+      "integrity": "sha512-dcS1ul+9tmeD95T+x28/ehLgd9mENa3LsvDTtzm3vyBEO7RPptvAD+t44WVXaUjTBRcrpFeFlC8WCruUR456hw==",
       "dev": true
     },
     "latest-version": {
@@ -3551,6 +3582,11 @@
         "package-json": "^6.3.0"
       }
     },
+    "layout-base": {
+      "version": "1.0.2",
+      "resolved": "https://registry.npmjs.org/layout-base/-/layout-base-1.0.2.tgz",
+      "integrity": "sha512-8h2oVEZNktL4BH2JCOI90iD1yXwL6iNW7KcCKT2QZgQJR2vbqDsldCTPRU9NifTCqHZci57XvQQ15YTu+sTYPg=="
+    },
     "lcid": {
       "version": "2.0.0",
       "resolved": "https://registry.npmjs.org/lcid/-/lcid-2.0.0.tgz",
@@ -3593,6 +3629,11 @@
       "integrity": "sha512-8xOcRHvCjnocdS5cpwXQXVzmmh5e5+saE2QGoeQmbKmRS6J3VQppPOIt0MnmE+4xlZoumy0GPG0D0MVIQbNA1A==",
       "dev": true
     },
+    "lodash.debounce": {
+      "version": "4.0.8",
+      "resolved": "https://registry.npmjs.org/lodash.debounce/-/lodash.debounce-4.0.8.tgz",
+      "integrity": "sha1-gteb/zCmfEAF/9XiUVMArZyk168="
+    },
     "lodash.find": {
       "version": "4.6.0",
       "resolved": "https://registry.npmjs.org/lodash.find/-/lodash.find-4.6.0.tgz",
@@ -3805,9 +3846,9 @@
       }
     },
     "minimist": {
-      "version": "1.2.0",
-      "resolved": "https://registry.npmjs.org/minimist/-/minimist-1.2.0.tgz",
-      "integrity": "sha1-o1AIsg9BOD7sH7kU9M1d95omQoQ=",
+      "version": "1.2.5",
+      "resolved": "https://registry.npmjs.org/minimist/-/minimist-1.2.5.tgz",
+      "integrity": "sha512-FM9nNUYrRBAELZQT3xeZQ7fmMOBg6nWNmJKTcgsJeaLstP/UODVpGsr5OhXhhXg6f+qtJ8uiZ+PUxkDWcgIXLw==",
       "dev": true
     },
     "mississippi": {
@@ -3850,20 +3891,12 @@
       }
     },
     "mkdirp": {
-      "version": "0.5.1",
-      "resolved": "https://registry.npmjs.org/mkdirp/-/mkdirp-0.5.1.tgz",
-      "integrity": "sha1-MAV0OOrGz3+MR2fzhkjWaX11yQM=",
+      "version": "0.5.3",
+      "resolved": "https://registry.npmjs.org/mkdirp/-/mkdirp-0.5.3.tgz",
+      "integrity": "sha512-P+2gwrFqx8lhew375MQHHeTlY8AuOJSrGf0R5ddkEndUkmwpgUob/vQuBD1V22/Cw1/lJr4x+EjllSezBThzBg==",
       "dev": true,
       "requires": {
-        "minimist": "0.0.8"
-      },
-      "dependencies": {
-        "minimist": {
-          "version": "0.0.8",
-          "resolved": "https://registry.npmjs.org/minimist/-/minimist-0.0.8.tgz",
-          "integrity": "sha1-hX/Kv8M5fSYluCKCYuhqp6ARsF0=",
-          "dev": true
-        }
+        "minimist": "^1.2.5"
       }
     },
     "move-concurrently": {
@@ -3892,13 +3925,6 @@
       "integrity": "sha512-nnbWWOkoWyUsTjKrhgD0dcz22mdkSnpYqbEjIm2nhwhuxlSkpywJmBo8h0ZqJdkp73mb90SssHkN4rsRaBAfAA==",
       "dev": true
     },
-    "nan": {
-      "version": "2.14.0",
-      "resolved": "https://registry.npmjs.org/nan/-/nan-2.14.0.tgz",
-      "integrity": "sha512-INOFj37C7k3AfaNTtX8RhsTw7qRy7eLET14cROi9+5HAVbbHuIWUHEauBv5qT4Av2tWasiTY1Jw6puUNqRJXQg==",
-      "dev": true,
-      "optional": true
-    },
     "nanomatch": {
       "version": "1.2.13",
       "resolved": "https://registry.npmjs.org/nanomatch/-/nanomatch-1.2.13.tgz",