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% LTeX: enabled=false
@article{church2012next,
title={Next-generation digital information storage in DNA},
author={Church, George M and Gao, Yuan and Kosuri, Sriram},
journal={Science},
volume={337},
number={6102},
pages={1628--1628},
year={2012},
doi={10.1126/science.1226355},
publisher={American Association for the Advancement of Science}
}
@article{goldman2013towards,
title={Towards practical, high-capacity, low-maintenance information storage in synthesized DNA},
author={Goldman, Nick and Bertone, Paul and Chen, Siyuan and Dessimoz, Christophe and LeProust, Emily M and Sipos, Botond and Birney, Ewan},
journal={Nature},
volume={494},
number={7435},
pages={77--80},
year={2013},
doi={10.1038/nature11875},
publisher={Nature Publishing Group}
}
@article{werner2012fast,
title={Fast track assembly of multigene constructs using Golden Gate cloning and the MoClo system},
author={Werner, Stefan and Engler, Carola and Weber, Ernst and Gruetzner, Ramona and Marillonnet, Sylvestre},
journal={Bioengineered},
volume={3},
number={1},
pages={38--43},
year={2012},
doi={10.4161/bbug.3.1.18223},
publisher={Taylor \& Francis}
}
@article{yazdi2017portable,
title={Portable and error-free DNA-based data storage},
author={Yazdi, SM Hossein Tabatabaei and Gabrys, Ryan and Milenkovic, Olgica},
journal={Scientific reports},
volume={7},
number={1},
pages={1--6},
year={2017},
doi={10.1038/s41598-017-05188-1},
publisher={Nature Publishing Group}
}
@article{takahashi2019demonstration,
title={Demonstration of end-to-end automation of DNA data storage},
author={Takahashi, Christopher N and Nguyen, Bichlien H and Strauss, Karin and Ceze, Luis},
journal={Scientific reports},
volume={9},
number={1},
pages={1--5},
year={2019},
doi={10.1038/s41598-019-41228-8},
publisher={Nature Publishing Group}
}
@article{bloom1970space,
title={Space/time trade-offs in hash coding with allowable errors},
author={Bloom, Burton H},
journal={Communications of the ACM},
volume={13},
number={7},
pages={422--426},
year={1970},
issn={0001-0782},
doi={10.1145/362686.362692},
publisher={ACM New York, NY, USA}
}
@article{rabin1981fingerprinting,
title={Fingerprinting by random polynomials},
author={Rabin, Michael O},
journal={Technical report},
year={1981},
publisher={Center for Research in Computing Technology, Harvard University}
}
@misc{rfc1950,
series={Request for Comments},
number=1950,
howpublished={RFC 1950},
publisher={RFC Editor},
doi={10.17487/RFC1950},
url={https://rfc-editor.org/rfc/rfc1950.txt},
author={L. Peter Deutsch and Jean-loup Gailly},
title={{ZLIB Compressed Data Format Specification version 3.3}},
pagetotal=11,
year=1996,
month=may
}
@misc{rfc1951,
series={Request for Comments},
number=1951,
howpublished={RFC 1951},
publisher={RFC Editor},
doi={10.17487/RFC1951},
url={https://rfc-editor.org/rfc/rfc1951.txt},
author={L. Peter Deutsch},
title={{DEFLATE Compressed Data Format Specification version 1.3}},
pagetotal=17,
year=1996,
month=may
}
@misc{percival2003naive,
title={Na{\i}ve differences of executable code},
author={Percival, Colin},
howpublished={\url{http://www.daemonology.net/papers/bsdiff.pdf}},
year={2003},
publisher={Citeseer}
}
@misc{straub2006git,
title={Git: Internals - Git Objects},
author={Straub, Ben and Torvalds, Linus and others},
howpublished={\url{https://git-scm.com/book/en/v2/Git-Internals-Git-Objects}},
year={2006},
note={[Online; accessed: 2021-11-11]}
}
@inproceedings{zhang2006hptfs,
title={Hptfs: A high performance tape file system},
author={Zhang, Xianbo and Du, David and Hughes, Jim and Kavuri, Ravi and StorageTek, Sun},
booktitle={Proceedings of 14th NASA Goddard/23rd IEEE conference on Mass Storage System and Technologies},
year={2006},
organization={Citeseer}
}
@misc{lougher2009squashfs,
title={SquashFS, a compressed read-only filesystem for Linux},
author={Lougher, Phillip},
howpublished={\url{https://docs.kernel.org/filesystems/squashfs.html}},
year={2009},
note={[Online; accessed: 2021-11-04]}
}
@misc{hipp2006fdelta,
title={Fossil Delta Format},
author={D. Richard Hipp},
howpublished={\url{https://fossil-scm.org/home/doc/trunk/www/delta_format.wiki}},
year={2006},
note={[Online; accessed: 2021-11-10]}
}
@misc{pike2011gob,
title={Gobs of data},
author={Rob Pike},
howpublished={\url{https://go.dev/blog/gob}},
year={2011},
note={[Online; accessed: 2021-11-10]}
}
@misc{waldmann2017borg,
title={Borg: Internals},
author={Waldmann, Thomas and others},
howpublished={\url{https://borgbackup.readthedocs.io/en/stable/internals.html}},
year={2017},
note={[Online; accessed: 2021-11-11]}
}
@misc{chromium2012courgette,
title={Software Updates: Courgette},
author={The Chromium Projects},
howpublished={\url{https://www.chromium.org/developers/design-documents/software-updates-courgette}},
year={2012},
note={[Online; accessed: 2021-11-10]}
}
@inproceedings{pease2010linear,
title={The linear tape file system},
author={Pease, David and Amir, Arnon and Real, Lucas Villa and Biskeborn, Brian and Richmond, Michael and Abe, Atsushi},
booktitle={2010 IEEE 26th Symposium on Mass Storage Systems and Technologies (MSST)},
pages={1--8},
year={2010},
doi={10.1109/MSST.2010.5496989},
organization={IEEE}
}
@misc{optical2003universal,
title={Universal Disk Format Specification, Revision 2.50},
author={Optical Storage Technology Association and others},
year={2003},
publisher={Apr}
}
# the main article
@article{shilane2012wan,
title={WAN-optimized replication of backup datasets using stream-informed delta compression},
author={Shilane, Philip and Huang, Mark and Wallace, Grant and Hsu, Windsor},
journal={ACM Transactions on Storage (ToS)},
volume={8},
number={4},
pages={1--26},
year={2012},
doi={10.1145/2385603.2385606},
publisher={ACM New York, NY, USA}
}
@article{rodeh2013btrfs,
title={BTRFS: The Linux B-tree filesystem},
author={Rodeh, Ohad and Bacik, Josef and Mason, Chris},
journal={ACM Transactions on Storage (TOS)},
volume={9},
number={3},
pages={1--32},
year={2013},
doi={10.1145/2501620.2501623},
publisher={ACM New York, NY, USA}
}
@inproceedings{gao2019erofs,
title={{EROFS}: A Compression-friendly Readonly File System for Resource-scarce Devices},
author={Gao, Xiang and Dong, Mingkai and Miao, Xie and Du, Wei and Yu, Chao and Chen, Haibo},
booktitle={2019 {USENIX} Annual Technical Conference ({USENIX} {ATC} 19)},
isbn={978-1-939133-03-8},
publisher={{USENIX} Association},
url={https://www.usenix.org/conference/atc19/presentation/gao},
pages={149--162},
year={2019}
}
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