% LTeX: enabled=false

@article{church2012next,
  title={Next-generation digital information storage in DNA},
  author={Church, George M and Gao, Yuan and Kosuri, Sriram},
  journal={Science},
  volume={337},
  number={6102},
  pages={1628--1628},
  year={2012},
  doi={10.1126/science.1226355},
  publisher={American Association for the Advancement of Science}
}

@article{goldman2013towards,
  title={Towards practical, high-capacity, low-maintenance information storage in synthesized DNA},
  author={Goldman, Nick and Bertone, Paul and Chen, Siyuan and Dessimoz, Christophe and LeProust, Emily M and Sipos, Botond and Birney, Ewan},
  journal={Nature},
  volume={494},
  number={7435},
  pages={77--80},
  year={2013},
  doi={10.1038/nature11875},
  publisher={Nature Publishing Group}
}

@article{werner2012fast,
  title={Fast track assembly of multigene constructs using Golden Gate cloning and the MoClo system},
  author={Werner, Stefan and Engler, Carola and Weber, Ernst and Gruetzner, Ramona and Marillonnet, Sylvestre},
  journal={Bioengineered},
  volume={3},
  number={1},
  pages={38--43},
  year={2012},
  doi={10.4161/bbug.3.1.18223},
  publisher={Taylor \& Francis}
}

@article{yazdi2017portable,
  title={Portable and error-free DNA-based data storage},
  author={Yazdi, SM Hossein Tabatabaei and Gabrys, Ryan and Milenkovic, Olgica},
  journal={Scientific reports},
  volume={7},
  number={1},
  pages={1--6},
  year={2017},
  doi={10.1038/s41598-017-05188-1},
  publisher={Nature Publishing Group}
}

@article{takahashi2019demonstration,
  title={Demonstration of end-to-end automation of DNA data storage},
  author={Takahashi, Christopher N and Nguyen, Bichlien H and Strauss, Karin and Ceze, Luis},
  journal={Scientific reports},
  volume={9},
  number={1},
  pages={1--5},
  year={2019},
  doi={10.1038/s41598-019-41228-8},
  publisher={Nature Publishing Group}
}

@article{bloom1970space,
  title={Space/time trade-offs in hash coding with allowable errors},
  author={Bloom, Burton H},
  journal={Communications of the ACM},
  volume={13},
  number={7},
  pages={422--426},
  year={1970},
  issn={0001-0782},
  doi={10.1145/362686.362692},
  publisher={ACM New York, NY, USA}
}

@article{rabin1981fingerprinting,
  title={Fingerprinting by random polynomials},
  author={Rabin, Michael O},
  journal={Technical report},
  year={1981},
  publisher={Center for Research in Computing Technology, Harvard University}
}

@misc{rfc1950,
  series={Request for Comments},
  number=1950,
  howpublished={RFC 1950},
  publisher={RFC Editor},
  doi={10.17487/RFC1950},
  url={https://rfc-editor.org/rfc/rfc1950.txt},
  author={L. Peter Deutsch and Jean-loup Gailly},
  title={{ZLIB Compressed Data Format Specification version 3.3}},
  pagetotal=11,
  year=1996,
  month=may
}

@misc{rfc1951,
  series={Request for Comments},
  number=1951,
  howpublished={RFC 1951},
  publisher={RFC Editor},
  doi={10.17487/RFC1951},
  url={https://rfc-editor.org/rfc/rfc1951.txt},
  author={L. Peter Deutsch},
  title={{DEFLATE Compressed Data Format Specification version 1.3}},
  pagetotal=17,
  year=1996,
  month=may
  }

@misc{percival2003naive,
  title={Na{\i}ve differences of executable code},
  author={Percival, Colin},
  howpublished={\url{http://www.daemonology.net/papers/bsdiff.pdf}},
  year={2003},
  publisher={Citeseer}
}

@misc{straub2006git,
  title={Git: Internals - Git Objects},
  author={Straub, Ben and Torvalds, Linus and others},
  howpublished={\url{https://git-scm.com/book/en/v2/Git-Internals-Git-Objects}},
  year={2006},
  note={[Online; accessed: 2021-11-11]}
}

@inproceedings{zhang2006hptfs,
  title={Hptfs: A high performance tape file system},
  author={Zhang, Xianbo and Du, David and Hughes, Jim and Kavuri, Ravi and StorageTek, Sun},
  booktitle={Proceedings of 14th NASA Goddard/23rd IEEE conference on Mass Storage System and Technologies},
  year={2006},
  organization={Citeseer}
}

@misc{lougher2009squashfs,
  title={SquashFS, a compressed read-only filesystem for Linux},
  author={Lougher, Phillip},
  howpublished={\url{https://docs.kernel.org/filesystems/squashfs.html}},
  year={2009},
  note={[Online; accessed: 2021-11-04]}
}

@misc{hipp2006fdelta,
  title={Fossil Delta Format},
  author={D. Richard Hipp},
  howpublished={\url{https://fossil-scm.org/home/doc/trunk/www/delta_format.wiki}},
  year={2006},
  note={[Online; accessed: 2021-11-10]}
}

@misc{pike2011gob,
  title={Gobs of data},
  author={Rob Pike},
  howpublished={\url{https://go.dev/blog/gob}},
  year={2011},
  note={[Online; accessed: 2021-11-10]}
}

@misc{waldmann2017borg,
  title={Borg: Internals},
  author={Waldmann, Thomas and others},
  howpublished={\url{https://borgbackup.readthedocs.io/en/stable/internals.html}},
  year={2017},
  note={[Online; accessed: 2021-11-11]}
}

@misc{chromium2012courgette,
  title={Software Updates: Courgette},
  author={The Chromium Projects},
  howpublished={\url{https://www.chromium.org/developers/design-documents/software-updates-courgette}},
  year={2012},
  note={[Online; accessed: 2021-11-10]}
}

@inproceedings{pease2010linear,
  title={The linear tape file system},
  author={Pease, David and Amir, Arnon and Real, Lucas Villa and Biskeborn, Brian and Richmond, Michael and Abe, Atsushi},
  booktitle={2010 IEEE 26th Symposium on Mass Storage Systems and Technologies (MSST)},
  pages={1--8},
  year={2010},
  doi={10.1109/MSST.2010.5496989},
  organization={IEEE}
}

@misc{optical2003universal,
  title={Universal Disk Format Specification, Revision 2.50},
  author={Optical Storage Technology Association and others},
  year={2003},
  publisher={Apr}
}

# the main article
@article{shilane2012wan,
  title={WAN-optimized replication of backup datasets using stream-informed delta compression},
  author={Shilane, Philip and Huang, Mark and Wallace, Grant and Hsu, Windsor},
  journal={ACM Transactions on Storage (ToS)},
  volume={8},
  number={4},
  pages={1--26},
  year={2012},
  doi={10.1145/2385603.2385606},
  publisher={ACM New York, NY, USA}
}

@article{rodeh2013btrfs,
  title={BTRFS: The Linux B-tree filesystem},
  author={Rodeh, Ohad and Bacik, Josef and Mason, Chris},
  journal={ACM Transactions on Storage (TOS)},
  volume={9},
  number={3},
  pages={1--32},
  year={2013},
  doi={10.1145/2501620.2501623},
  publisher={ACM New York, NY, USA}
}

@inproceedings{gao2019erofs,
  title={{EROFS}: A Compression-friendly Readonly File System for Resource-scarce Devices},
  author={Gao, Xiang and Dong, Mingkai and Miao, Xie and Du, Wei and Yu, Chao and Chen, Haibo},
  booktitle={2019 {USENIX} Annual Technical Conference ({USENIX} {ATC} 19)},
  isbn={978-1-939133-03-8},
  publisher={{USENIX} Association},
  url={https://www.usenix.org/conference/atc19/presentation/gao},
  pages={149--162},
  year={2019}
}