fix mystical bug by making multiple passes

We make ne passes while new blocks have been added.
This way we are assured that the result will be the same on following runs.

result :
      161	/tmp/test-1/00001/recipe
      161	/tmp/test-1/00001/files
        0	/tmp/test-1/00001/hashes
       40	/tmp/test-1/00001/chunks
      482	/tmp/test-1/00001
  9904052	/tmp/test-1/00000/recipe
  5377304	/tmp/test-1/00000/files
  2061331	/tmp/test-1/00000/hashes
207958371	/tmp/test-1/00000/chunks
225301178	/tmp/test-1/00000
225301740	/tmp/test-1

3 files changed, 29 insertions, 16 deletions

diff --git a/TODO.md b/TODO.md
index f3c2d3f..b154718 100644
--- a/TODO.md
+++ b/TODO.md
@@ -89,3 +89,6 @@ The first solution would have an advantage if we were directly streaming the
 output of the program into DNA, as it could start DNA-encode it from the first
 chunk. The second solution will probably have better space-saving performance as
 waiting for better matches will probably lower the size of the patches.
+
+This has been fixed by making multiple passes until no more blocks are added,
+this way we are assured that the result will be the same on the following run.
diff --git a/repo.go b/repo.go
index d58eebb..ec5935d 100644
--- a/repo.go
+++ b/repo.go
@@ -154,13 +154,24 @@ func (r *Repo) Commit(source string) {
 	newChunkPath := filepath.Join(newPath, chunksName)
 	os.Mkdir(newPath, 0775)      // TODO: handle errors
 	os.Mkdir(newChunkPath, 0775) // TODO: handle errors
-	reader, writer := io.Pipe()
 	files := listFiles(source)
 	r.loadHashes(versions)
 	r.loadFileLists(versions)
 	r.loadRecipes(versions)
-	go concatFiles(&files, writer)
-	recipe := r.matchStream(reader, newVersion)
+	storeQueue := make(chan chunkData, 10)
+	storeEnd := make(chan bool)
+	go r.storageWorker(newVersion, storeQueue, storeEnd)
+	var last, nlast, pass uint64
+	var recipe []Chunk
+	for ; nlast > last || pass == 0; pass++ {
+		logger.Infof("pass number %d", pass+1)
+		last = nlast
+		reader, writer := io.Pipe()
+		go concatFiles(&files, writer)
+		recipe, nlast = r.matchStream(reader, storeQueue, newVersion, last)
+	}
+	close(storeQueue)
+	<-storeEnd
 	r.storeFileList(newVersion, unprefixFiles(files, source))
 	r.storeRecipe(newVersion, recipe)
 }
@@ -355,7 +366,7 @@ func (r *Repo) storageWorker(version int, storeQueue <-chan chunkData, end chan<
 		if err != nil {
 			logger.Error(err)
 		}
-		logger.Debug("stored", data.id)
+		// logger.Debug("stored ", data.id)
 	}
 	if err = file.Close(); err != nil {
 		logger.Panic(err)
@@ -566,10 +577,10 @@ func (r *Repo) encodeTempChunk(temp BufferedChunk, version int, last *uint64, st
 			id:      id,
 		}
 		r.chunkCache.Set(id, temp.Bytes())
-		logger.Debug("add new chunk", id)
+		logger.Debug("add new chunk ", id)
 		return NewStoredChunk(r, id), false
 	}
-	logger.Debug("add new partial chunk of size:", chunk.Len())
+	logger.Debug("add new partial chunk of size: ", chunk.Len())
 	return
 }
 
@@ -593,22 +604,18 @@ func (r *Repo) encodeTempChunks(prev BufferedChunk, curr BufferedChunk, version
 	return []Chunk{prevD, currD}
 }
 
-func (r *Repo) matchStream(stream io.Reader, version int) []Chunk {
+func (r *Repo) matchStream(stream io.Reader, storeQueue chan<- chunkData, version int, last uint64) ([]Chunk, uint64) {
 	var b byte
 	var chunks []Chunk
 	var prev *TempChunk
-	var last uint64
 	var err error
 	bufStream := bufio.NewReaderSize(stream, r.chunkSize*2)
 	buff := make([]byte, r.chunkSize, r.chunkSize*2)
-	storeQueue := make(chan chunkData, 10)
-	storeEnd := make(chan bool)
-	go r.storageWorker(version, storeQueue, storeEnd)
 	if n, err := io.ReadFull(stream, buff); n < r.chunkSize {
 		if err == io.ErrUnexpectedEOF {
 			c, _ := r.encodeTempChunk(NewTempChunk(buff[:n]), version, &last, storeQueue)
 			chunks = append(chunks, c)
-			return chunks
+			return chunks, last
 		} else {
 			logger.Panicf("matching stream, read only %d bytes with error '%s'", n, err)
 		}
@@ -671,9 +678,7 @@ func (r *Repo) matchStream(stream io.Reader, version int) []Chunk {
 		}
 		chunks = append(chunks, r.encodeTempChunks(prev, temp, version, &last, storeQueue)...)
 	}
-	close(storeQueue)
-	<-storeEnd
-	return chunks
+	return chunks, last
 }
 
 func (r *Repo) restoreStream(stream io.WriteCloser, recipe []Chunk) {
diff --git a/repo_test.go b/repo_test.go
index 0ee7bef..52da9ae 100644
--- a/repo_test.go
+++ b/repo_test.go
@@ -224,7 +224,12 @@ func TestBsdiff(t *testing.T) {
 	newPath := filepath.Join(repo.path, fmt.Sprintf(versionFmt, newVersion))
 	os.MkdirAll(newPath, 0775)
 	reader := getDataStream(dataDir, concatFiles)
-	recipe := repo.matchStream(reader, newVersion)
+	storeQueue := make(chan chunkData, 10)
+	storeEnd := make(chan bool)
+	go repo.storageWorker(newVersion, storeQueue, storeEnd)
+	recipe, _ := repo.matchStream(reader, storeQueue, newVersion, 0)
+	close(storeQueue)
+	<-storeEnd
 	newChunks := extractDeltaChunks(recipe)
 	testutils.AssertLen(t, 2, newChunks, "New delta chunks:")
 	for _, c := range newChunks {